El kinetic kd test case
Starting point for a benchmark for comparing different path generation methods.
- The executable eiron-path-distribution-test traces paths and writes their location counts (divided by the number of trajectories at fixed intervals dt to a grid.
- The script run-path-comparison.sh repeatedly calls this executable for differing number of particles with for two different seeds. It then calls eiron-compare-output to compare the results. We expect the MSE to decrease inverse linearly with the number of samples.
Issues before merging:
eiron-compare-output crashes, comparison needs to be done another way. @lapposka , you showed me how to do this last week, but I lost the commands. Can you document these here?I'm not good enough with CMake to get the script to copy to the equivalent folder in the build directory automatically. Again, @lapposka I could use some help here.
Next steps:
- Do we have a good value now for delta_t? This should be tested after everything works.
- Using this benchmark to compare KDMC and kinetic simulation.
Edited by Emil Loevbak